Error-Correcting Pooling Designs Associated with
Finite Geometries and Association Schemes
Tayuan Huang
Department of Applied Mathematics, Taiwan Jiaotong University, Hsinchu, Taiwan
Abstract Full Text PDF
The notion of $d$-disjunct
matrices was first introduced by Kautz and Singleton in 1964, and
has been generalized to$(s,l)$-superimposed codes and designs by D'yachkov and Torney $et. al.$ in 2002, and to
$(s,l;e)$- generalized cover free families recently by
Stinson. All these structures can be used in combinatorial group
testing algorithms applicable to DNA library screening, and they
are therefore called pooling designs. As pointed out by D.-Z.
Du that the structure of association schemes may play an
important role in improving the performance of pooling designs, a
few families of $(s,l,e)$-disjunct matrices defined over Johnson
graphs and Grassmann graphs were previously considered.
Following this way, error - correcting pooling designs based on
incidence matrices associated with distance regular graphs over
some finite geometries will be considered in this talk, including
the symplectic geometry and the attenuated spaces. It then
leads to the notion of pooling spaces, i.e., ranked
partially ordered sets with certain atomic intervals. Optimal
error correcting capability for a few families of pooling designs
derived from pooling spaces with intervals carrying the structure
of projective geometries will be considered.
A decoding
algorithm for pooling designs defined over $(s,l,e)$- disjunct
matrices will also be included in this talk. Moreover, we will
show that $(s,l,e)$- disjunct matrices also provide a class of
pooling designs over complexes, called setwise group testing,
which fits the practical consideration better.